Combination of short-read, long-read, and optical mapping assemblies reveals large-scale tandem repeat arrays with population genetic implications

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Figure 3.
Figure 3.

Chromosome-level distribution of population-scaled recombination rate ρ and structural genome features show, for example, chromosomes of varying size: (Black dots) the weighted mean of ρ/bp in 50-kb windows estimated from a Swedish hooded crow population; (gray lines) SR scaffold ends; (red squares) repetitive anchored map (RAM) with the possible co-occurrence of the crowSat1 satellite. Data are shown for representative synteny- and collinearity-based chromosomes (for the remaining chromosomes, see Supplemental Fig. S5).

This Article

  1. Genome Res. 27: 697-708

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