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  APOBEC3A/B-induced mutagenesis is responsible for 20% of heritable mutations in the TpCpW context

  • Vladimir B. Seplyarskiy,
  • Maria A. Andrianova,
  • and Georgii A. Bazykin

  Genome Res. February 2017 27: 175-184; Published in Advance December 9, 2016, doi:10.1101/gr.210336.116
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  Whole-transcriptome sequencing identifies a distinct subtype of acute lymphoblastic leukemia with predominant genomic abnormalities of EP300 and CREBBP

  • Maoxiang Qian,
  • Hui Zhang,
  • Shirley Kow-Yin Kham,
  • Shuguang Liu,
  • Chuang Jiang,
  • Xujie Zhao,
  • Yi Lu,
  • Charnise Goodings,
  • Ting-Nien Lin,
  • Ranran Zhang,
  • Takaya Moriyama,
  • Zhaohong Yin,
  • Zhenhua Li,
  • Thuan Chong Quah,
  • Hany Ariffin,
  • Ah Moy Tan,
  • Shuhong Shen,
  • Deepa Bhojwani,
  • Shaoyan Hu,
  • Suning Chen,
  • Huyong Zheng,
  • Ching-Hon Pui,
  • Allen Eng-Juh Yeoh,
  • and Jun J. Yang

  Genome Res. February 2017 27: 185-195; Published in Advance November 30, 2016, doi:10.1101/gr.209163.116
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  Identification of clinically predictive metagenes that encode components of a network coupling cell shape to transcription by image-omics

  • Heba Z. Sailem and
  • Chris Bakal

  Genome Res. February 2017 27: 196-207; Published in Advance November 18, 2016, doi:10.1101/gr.202028.115
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  Single-cell transcriptomes identify human islet cell signatures and reveal cell-type–specific expression changes in type 2 diabetes

  • Nathan Lawlor,
  • Joshy George,
  • Mohan Bolisetty,
  • Romy Kursawe,
  • Lili Sun,
  • V. Sivakamasundari,
  • Ina Kycia,
  • Paul Robson,
  • and Michael L. Stitzel

  Genome Res. February 2017 27: 208-222; Published in Advance November 18, 2016, doi:10.1101/gr.212720.116
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  Characterization of hundreds of regulatory landscapes in developing limbs reveals two regimes of chromatin folding

  • Guillaume Andrey,
  • Robert Schöpflin,
  • Ivana Jerković,
  • Verena Heinrich,
  • Daniel M. Ibrahim,
  • Christina Paliou,
  • Myriam Hochradel,
  • Bernd Timmermann,
  • Stefan Haas,
  • Martin Vingron,
  • and Stefan Mundlos

  Genome Res. February 2017 27: 223-233; Published in Advance December 6, 2016, doi:10.1101/gr.213066.116
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  microRNA target prediction programs predict many false positives

  • Natalia Pinzón,
  • Blaise Li,
  • Laura Martinez,
  • Anna Sergeeva,
  • Jessy Presumey,
  • Florence Apparailly,
  • and Hervé Seitz

  Genome Res. February 2017 27: 234-245; Published in Advance November 15, 2016, doi:10.1101/gr.205146.116
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  Enhancers and super-enhancers have an equivalent regulatory role in embryonic stem cells through regulation of single or multiple genes

  • Sakthi D. Moorthy,
  • Scott Davidson,
  • Virlana M. Shchuka,
  • Gurdeep Singh,
  • Nakisa Malek-Gilani,
  • Lida Langroudi,
  • Alexandre Martchenko,
  • Vincent So,
  • Neil N. Macpherson,
  • and Jennifer A. Mitchell

  Genome Res. February 2017 27: 246-258; Published in Advance November 28, 2016, doi:10.1101/gr.210930.116
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  Comparative analyses of super-enhancers reveal conserved elements in vertebrate genomes

  • Yuvia A. Pérez-Rico,
  • Valentina Boeva,
  • Allison C. Mallory,
  • Angelo Bitetti,
  • Sara Majello,
  • Emmanuel Barillot,
  • and Alena Shkumatava

  Genome Res. February 2017 27: 259-268; Published in Advance December 13, 2016, doi:10.1101/gr.203679.115
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  Nucleosome occupancy as a novel chromatin parameter for replication origin functions

  • Jairo Rodriguez,
  • Laura Lee,
  • Bryony Lynch,
  • and Toshio Tsukiyama

  Genome Res. February 2017 27: 269-277; Published in Advance November 28, 2016, doi:10.1101/gr.209940.116
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  Numerical and spatial patterning of yeast meiotic DNA breaks by Tel1

  • Neeman Mohibullah and
  • Scott Keeney

  Genome Res. February 2017 27: 278-288; Published in Advance December 6, 2016, doi:10.1101/gr.213587.116
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  Large-scale reduction of the Bacillus subtilis genome: consequences for the transcriptional network, resource allocation, and metabolism

  • Daniel R. Reuß,
  • Josef Altenbuchner,
  • Ulrike Mäder,
  • Hermann Rath,
  • Till Ischebeck,
  • Praveen Kumar Sappa,
  • Andrea Thürmer,
  • Cyprien Guérin,
  • Pierre Nicolas,
  • Leif Steil,
  • Bingyao Zhu,
  • Ivo Feussner,
  • Stefan Klumpp,
  • Rolf Daniel,
  • Fabian M. Commichau,
  • Uwe Völker,
  • and Jörg Stülke

  Genome Res. February 2017 27: 289-299; Published in Advance December 13, 2016, doi:10.1101/gr.215293.116
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