The phylogenetic tree, geographical distribution, and population history of vervet subspecies. (A) Subspecies relationships were obtained by applying a clustering algorithm to the pairwise distance matrix. The tree is rooted using rhesus macaque as an outgroup, and the estimated geographical distribution of each subspecies based on previous field studies used to characterize endangered species (www.iucnredlist.org) is displayed to the right. (B) The inferred effective population size across time (both on log-scale) for each subspecies sample inferred with the multiple sequentially Markovian coalescent (MSMC) software in two-haplotype mode (Schiffels and Durbin 2014).
