Index by Author

December 2014; 24 (12)
  1. A
  2. B
  3. C
  4. D
  5. E
  6. F
  7. G
  8. H
  9. I
  10. J
  11. K
  12. L
  13. M
  14. N
  15. O
  16. P
  17. Q
  18. R
  19. S
  20. T
  21. U
  22. V
  23. W
  24. X
  25. Y
  26. Z

A

  1. Adey, Andrew

  2. Agarwala, Richa

  3. Akey, Joshua M.

  4. Albertson, Donna G.

    • DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly Genome Res. December 2014 24: 2022-2032; Published in Advance September 18, 2014, doi:10.1101/gr.175141.114
      OPEN ACCESS ARTICLE

  5. Amini, Sasan

  6. Andrie, Jennifer M.

  7. Artieri, Carlo G.

    • Accounting for biases in riboprofiling data indicates a major role for proline in stalling translation Genome Res. December 2014 24: 2011-2021; Published in Advance October 7, 2014, doi:10.1101/gr.175893.114

B

  1. Beal, Kathryn

  2. Beer, Michael A.

    • Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis Genome Res. December 2014 24: 1932-1944; Published in Advance October 15, 2014, doi:10.1101/gr.164178.113
      OPEN ACCESS ARTICLE

  3. Bengtsson, Henrik

    • DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly Genome Res. December 2014 24: 2022-2032; Published in Advance September 18, 2014, doi:10.1101/gr.175141.114
      OPEN ACCESS ARTICLE

  4. Björklund, Åsa K.

    • Tn5 transposase and tagmentation procedures for massively scaled sequencing projects Genome Res. December 2014 24: 2033-2040; Published in Advance July 30, 2014, doi:10.1101/gr.177881.114
      OPEN ACCESS ARTICLE

  5. Blobel, Gerd A.

    • Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis Genome Res. December 2014 24: 1932-1944; Published in Advance October 15, 2014, doi:10.1101/gr.164178.113
      OPEN ACCESS ARTICLE
    • Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis Genome Res. December 2014 24: 1945-1962; Published in Advance October 15, 2014, doi:10.1101/gr.164830.113
      OPEN ACCESS ARTICLE

  6. Brudno, Michael

  7. Brummelkamp, Thijn R.

  8. Bürckstümmer, Tilmann

  9. Burton, Joshua N.

C

  1. Chang, Jia-Ming

  2. Chen, Doris

  3. Cheng, Yong

  4. Chirn, Gung-wei

    • Transposable element dynamics and PIWI regulation impacts lncRNA and gene expression diversity in Drosophila ovarian cell cultures Genome Res. December 2014 24: 1977-1990; Published in Advance September 29, 2014, doi:10.1101/gr.178129.114

  5. Christiansen, Lena

  6. Church, Deanna M.

  7. Clark, Josef P.

    • Transposable element dynamics and PIWI regulation impacts lncRNA and gene expression diversity in Drosophila ovarian cell cultures Genome Res. December 2014 24: 1977-1990; Published in Advance September 29, 2014, doi:10.1101/gr.178129.114

  8. Clawson, Hiram

D

  1. Darling, Aaron E.

  2. Daza, Riza

  3. Deadman, Mary E.

    • Population and single-cell genomics reveal the Aire dependency, relief from Polycomb silencing, and distribution of self-antigen expression in thymic epithelia Genome Res. December 2014 24: 1918-1931; Published in Advance September 15, 2014, doi:10.1101/gr.171645.113
      OPEN ACCESS ARTICLE

  4. Dubchak, Inna

E

  1. Earl, Dent

  2. Edge, Peter

  3. Eichler, Evan E.

  4. Eijk, Paul P.

    • DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly Genome Res. December 2014 24: 2022-2032; Published in Advance September 18, 2014, doi:10.1101/gr.175141.114
      OPEN ACCESS ARTICLE

  5. Erb, Ionas

  6. Essletzbichler, Patrick

F

  1. Fitzgerald, Stephen

  2. Fraser, Hunter B.

    • Accounting for biases in riboprofiling data indicates a major role for proline in stalling translation Genome Res. December 2014 24: 2011-2021; Published in Advance October 7, 2014, doi:10.1101/gr.175893.114

  3. Fulton, Robert S.

G

  1. Gapp, Bianca V.

  2. Graves-Lindsay, Tina A.

  3. Grubert, Fabian

H

  1. Hardison, Ross C.

    • Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis Genome Res. December 2014 24: 1932-1944; Published in Advance October 15, 2014, doi:10.1101/gr.164178.113
      OPEN ACCESS ARTICLE
    • Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis Genome Res. December 2014 24: 1945-1962; Published in Advance October 15, 2014, doi:10.1101/gr.164830.113
      OPEN ACCESS ARTICLE

  2. Harris, Robert S.

  3. Haussler, David

  4. He, Chao

  5. Heger, Andreas

    • Population and single-cell genomics reveal the Aire dependency, relief from Polycomb silencing, and distribution of self-antigen expression in thymic epithelia Genome Res. December 2014 24: 1918-1931; Published in Advance September 15, 2014, doi:10.1101/gr.171645.113
      OPEN ACCESS ARTICLE

  6. Heidari, Nastaran

  7. Herrero, Javier

  8. Hickey, Glenn

  9. Hodis, Eran

    • Molecular dissection of the genetic mechanisms that underlie expression conservation in orthologous yeast ribosomal promoters Genome Res. December 2014 24: 1991-1999; Published in Advance October 7, 2014, doi:10.1101/gr.179259.114

  10. Holländer, Georg A.

    • Population and single-cell genomics reveal the Aire dependency, relief from Polycomb silencing, and distribution of self-antigen expression in thymic epithelia Genome Res. December 2014 24: 1918-1931; Published in Advance September 15, 2014, doi:10.1101/gr.171645.113
      OPEN ACCESS ARTICLE

  11. Hou, Minmei

  12. Huddleston, John

J

  1. Jahanbani, Fereshteh

K

  1. Kasowski, Maya

  2. Katsonis, Panagiotis

    • A formal perturbation equation between genotype and phenotype determines the Evolutionary Action of protein-coding variations on fitness Genome Res. December 2014 24: 2050-2058; Published in Advance September 12, 2014, doi:10.1101/gr.176214.114
      OPEN ACCESS ARTICLE

  3. Keller, Cheryl A.

    • Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis Genome Res. December 2014 24: 1932-1944; Published in Advance October 15, 2014, doi:10.1101/gr.164178.113
      OPEN ACCESS ARTICLE
    • Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis Genome Res. December 2014 24: 1945-1962; Published in Advance October 15, 2014, doi:10.1101/gr.164830.113
      OPEN ACCESS ARTICLE

  4. Kemena, Carsten

  5. Kent, William James

  6. Kim, Jaebum

  7. Kitzman, Jacob O.

  8. Konopka, Tomasz

  9. Kossenkov, Andrew V.

    • Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis Genome Res. December 2014 24: 1932-1944; Published in Advance October 15, 2014, doi:10.1101/gr.164178.113
      OPEN ACCESS ARTICLE

  10. Kralovics, Robert

  11. Kumar, Akash

L

  1. L. Gunderson, Kevin

  2. Lau, Nelson C.

    • Transposable element dynamics and PIWI regulation impacts lncRNA and gene expression diversity in Drosophila ovarian cell cultures Genome Res. December 2014 24: 1977-1990; Published in Advance September 29, 2014, doi:10.1101/gr.178129.114

  3. Lee, Dongwon

    • Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis Genome Res. December 2014 24: 1932-1944; Published in Advance October 15, 2014, doi:10.1101/gr.164178.113
      OPEN ACCESS ARTICLE

  4. Li, Daofeng

  5. Lichtarge, Olivier

    • A formal perturbation equation between genotype and phenotype determines the Evolutionary Action of protein-coding variations on fitness Genome Res. December 2014 24: 2050-2058; Published in Advance September 12, 2014, doi:10.1101/gr.176214.114
      OPEN ACCESS ARTICLE

  6. Lotan-Pompan, Maya

    • Molecular dissection of the genetic mechanisms that underlie expression conservation in orthologous yeast ribosomal promoters Genome Res. December 2014 24: 1991-1999; Published in Advance October 7, 2014, doi:10.1101/gr.179259.114

  7. Lubliner, Shai

    • Molecular dissection of the genetic mechanisms that underlie expression conservation in orthologous yeast ribosomal promoters Genome Res. December 2014 24: 1991-1999; Published in Advance October 7, 2014, doi:10.1101/gr.179259.114

M

  1. Ma, Jian

  2. Ma, Zhihai

  3. Macaulay, Iain C.

    • Population and single-cell genomics reveal the Aire dependency, relief from Polycomb silencing, and distribution of self-antigen expression in thymic epithelia Genome Res. December 2014 24: 1918-1931; Published in Advance September 15, 2014, doi:10.1101/gr.171645.113
      OPEN ACCESS ARTICLE

  4. Meijer, Gerrit A.

    • DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly Genome Res. December 2014 24: 2022-2032; Published in Advance September 18, 2014, doi:10.1101/gr.175141.114
      OPEN ACCESS ARTICLE

  5. Mishra, Tejaswini

    • Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis Genome Res. December 2014 24: 1932-1944; Published in Advance October 15, 2014, doi:10.1101/gr.164178.113
      OPEN ACCESS ARTICLE
    • Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis Genome Res. December 2014 24: 1945-1962; Published in Advance October 15, 2014, doi:10.1101/gr.164830.113
      OPEN ACCESS ARTICLE

  6. Molodtsov, Vladimir

  7. Morgulis, Aleksandr

  8. Morrissey, Christapher S.

    • Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis Genome Res. December 2014 24: 1932-1944; Published in Advance October 15, 2014, doi:10.1101/gr.164178.113
      OPEN ACCESS ARTICLE
    • Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis Genome Res. December 2014 24: 1945-1962; Published in Advance October 15, 2014, doi:10.1101/gr.164830.113
      OPEN ACCESS ARTICLE

N

  1. Nguyen, Ngan

  2. Nijman, Sebastian M.B.

  3. Notredame, Cedric

  4. Nusspaumer, Gretel

    • Population and single-cell genomics reveal the Aire dependency, relief from Polycomb silencing, and distribution of self-antigen expression in thymic epithelia Genome Res. December 2014 24: 1918-1931; Published in Advance September 15, 2014, doi:10.1101/gr.171645.113
      OPEN ACCESS ARTICLE

O

  1. Olshen, Adam B.

    • DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly Genome Res. December 2014 24: 2022-2032; Published in Advance September 18, 2014, doi:10.1101/gr.175141.114
      OPEN ACCESS ARTICLE

P

  1. Paten, Benedict

  2. Phanstiel, Douglas H.

  3. Picelli, Simone

    • Tn5 transposase and tagmentation procedures for massively scaled sequencing projects Genome Res. December 2014 24: 2033-2040; Published in Advance July 30, 2014, doi:10.1101/gr.177881.114
      OPEN ACCESS ARTICLE

  4. Pimkin, Maxim

    • Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis Genome Res. December 2014 24: 1932-1944; Published in Advance October 15, 2014, doi:10.1101/gr.164178.113
      OPEN ACCESS ARTICLE
    • Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis Genome Res. December 2014 24: 1945-1962; Published in Advance October 15, 2014, doi:10.1101/gr.164830.113
      OPEN ACCESS ARTICLE

  5. Pinkel, Daniel

    • DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly Genome Res. December 2014 24: 2022-2032; Published in Advance September 18, 2014, doi:10.1101/gr.175141.114
      OPEN ACCESS ARTICLE

  6. Poliakov, Alexander

  7. Ponting, Chris P.

    • Population and single-cell genomics reveal the Aire dependency, relief from Polycomb silencing, and distribution of self-antigen expression in thymic epithelia Genome Res. December 2014 24: 1918-1931; Published in Advance September 15, 2014, doi:10.1101/gr.171645.113
      OPEN ACCESS ARTICLE

R

  1. Rahman, Reazur

    • Transposable element dynamics and PIWI regulation impacts lncRNA and gene expression diversity in Drosophila ovarian cell cultures Genome Res. December 2014 24: 1977-1990; Published in Advance September 29, 2014, doi:10.1101/gr.178129.114

  2. Raney, Brian J.

  3. Reijneveld, Jaap C.

    • DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly Genome Res. December 2014 24: 2022-2032; Published in Advance September 18, 2014, doi:10.1101/gr.175141.114
      OPEN ACCESS ARTICLE

  4. Reinius, Björn

    • Tn5 transposase and tagmentation procedures for massively scaled sequencing projects Genome Res. December 2014 24: 2033-2040; Published in Advance July 30, 2014, doi:10.1101/gr.177881.114
      OPEN ACCESS ARTICLE

  5. Ronaghi, Mostafa

  6. Rustenburg, François

    • DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly Genome Res. December 2014 24: 2022-2032; Published in Advance September 18, 2014, doi:10.1101/gr.175141.114
      OPEN ACCESS ARTICLE

S

  1. Sagasser, Sven

    • Tn5 transposase and tagmentation procedures for massively scaled sequencing projects Genome Res. December 2014 24: 2033-2040; Published in Advance July 30, 2014, doi:10.1101/gr.177881.114
      OPEN ACCESS ARTICLE

  2. Sandberg, Rickard

    • Tn5 transposase and tagmentation procedures for massively scaled sequencing projects Genome Res. December 2014 24: 2033-2040; Published in Advance July 30, 2014, doi:10.1101/gr.177881.114
      OPEN ACCESS ARTICLE

  3. Sansom, Stephen N.

    • Population and single-cell genomics reveal the Aire dependency, relief from Polycomb silencing, and distribution of self-antigen expression in thymic epithelia Genome Res. December 2014 24: 1918-1931; Published in Advance September 15, 2014, doi:10.1101/gr.171645.113
      OPEN ACCESS ARTICLE

  4. Santoro, Federica

  5. Scheinin, Ilari

    • DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly Genome Res. December 2014 24: 2022-2032; Published in Advance September 18, 2014, doi:10.1101/gr.175141.114
      OPEN ACCESS ARTICLE

  6. Schneider, Valerie A.

  7. Segal, Eran

    • Molecular dissection of the genetic mechanisms that underlie expression conservation in orthologous yeast ribosomal promoters Genome Res. December 2014 24: 1991-1999; Published in Advance October 7, 2014, doi:10.1101/gr.179259.114

  8. Seledtsov, Igor

  9. Shendure, Jay

  10. Shikama-Dorn, Noriko

    • Population and single-cell genomics reveal the Aire dependency, relief from Polycomb silencing, and distribution of self-antigen expression in thymic epithelia Genome Res. December 2014 24: 1918-1931; Published in Advance September 15, 2014, doi:10.1101/gr.171645.113
      OPEN ACCESS ARTICLE

  11. Shiryev, Sergey A.

  12. Sie, Daoud

    • DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly Genome Res. December 2014 24: 2022-2032; Published in Advance September 18, 2014, doi:10.1101/gr.175141.114
      OPEN ACCESS ARTICLE

  13. Snyder, Michael P.

  14. Solovyev, Victor

  15. Steemers, Frank J.

  16. Steinberg, Karyn Meltz

  17. Sundaram, Vasavi

  18. Surti, Urvashi

  19. Sytnikova, Yuliya A.

    • Transposable element dynamics and PIWI regulation impacts lncRNA and gene expression diversity in Drosophila ovarian cell cultures Genome Res. December 2014 24: 1977-1990; Published in Advance September 29, 2014, doi:10.1101/gr.178129.114

V

  1. van de Wiel, Mark A.

    • DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly Genome Res. December 2014 24: 2022-2032; Published in Advance September 18, 2014, doi:10.1101/gr.175141.114
      OPEN ACCESS ARTICLE

  2. van Essen, Hendrik F.

    • DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly Genome Res. December 2014 24: 2022-2032; Published in Advance September 18, 2014, doi:10.1101/gr.175141.114
      OPEN ACCESS ARTICLE

  3. van Thuijl, Hinke F.

    • DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly Genome Res. December 2014 24: 2022-2032; Published in Advance September 18, 2014, doi:10.1101/gr.175141.114
      OPEN ACCESS ARTICLE

  4. Vesterman, Rita

    • Molecular dissection of the genetic mechanisms that underlie expression conservation in orthologous yeast ribosomal promoters Genome Res. December 2014 24: 1991-1999; Published in Advance October 7, 2014, doi:10.1101/gr.179259.114

W

  1. Wakefield, Jon

  2. Wang, Ting

  3. Warren, Wesley C.

  4. Weinberger, Adina

    • Molecular dissection of the genetic mechanisms that underlie expression conservation in orthologous yeast ribosomal promoters Genome Res. December 2014 24: 1991-1999; Published in Advance October 7, 2014, doi:10.1101/gr.179259.114

  5. Weiss, Mitchell J.

    • Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis Genome Res. December 2014 24: 1932-1944; Published in Advance October 15, 2014, doi:10.1101/gr.164178.113
      OPEN ACCESS ARTICLE
    • Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis Genome Res. December 2014 24: 1945-1962; Published in Advance October 15, 2014, doi:10.1101/gr.164830.113
      OPEN ACCESS ARTICLE

  6. Wesseling, Pieter

    • DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly Genome Res. December 2014 24: 2022-2032; Published in Advance September 18, 2014, doi:10.1101/gr.175141.114
      OPEN ACCESS ARTICLE

  7. Wilson, Richard K.

  8. Winberg, Gösta

    • Tn5 transposase and tagmentation procedures for massively scaled sequencing projects Genome Res. December 2014 24: 2033-2040; Published in Advance July 30, 2014, doi:10.1101/gr.177881.114
      OPEN ACCESS ARTICLE

  9. Wu, Weisheng

    • Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis Genome Res. December 2014 24: 1932-1944; Published in Advance October 15, 2014, doi:10.1101/gr.164178.113
      OPEN ACCESS ARTICLE
    • Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis Genome Res. December 2014 24: 1945-1962; Published in Advance October 15, 2014, doi:10.1101/gr.164830.113
      OPEN ACCESS ARTICLE

X

  1. Xing, Xiaoyun

Y

  1. Ylstra, Bauke

    • DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly Genome Res. December 2014 24: 2022-2032; Published in Advance September 18, 2014, doi:10.1101/gr.175141.114
      OPEN ACCESS ARTICLE

Z

  1. Zeevi, Danny

    • Molecular dissection of the genetic mechanisms that underlie expression conservation in orthologous yeast ribosomal promoters Genome Res. December 2014 24: 1991-1999; Published in Advance October 7, 2014, doi:10.1101/gr.179259.114

  2. Zhang, Michael Q.

  3. Zhanybekova, Saule

    • Population and single-cell genomics reveal the Aire dependency, relief from Polycomb silencing, and distribution of self-antigen expression in thymic epithelia Genome Res. December 2014 24: 1918-1931; Published in Advance September 15, 2014, doi:10.1101/gr.171645.113
      OPEN ACCESS ARTICLE

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