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Research

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  Combinatorial effects of multiple enhancer variants in linkage disequilibrium dictate levels of gene expression to confer susceptibility to common traits

  • Olivia Corradin,
  • Alina Saiakhova,
  • Batool Akhtar-Zaidi,
  • Lois Myeroff,
  • Joseph Willis,
  • Richard Cowper-Sal·lari,
  • Mathieu Lupien,
  • Sanford Markowitz,
  • and Peter C. Scacheri

  Genome Res. January 2014 24: 1-13; Published in Advance November 6, 2013, doi:10.1101/gr.164079.113
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  Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals

  • Alexis Battle,
  • Sara Mostafavi,
  • Xiaowei Zhu,
  • James B. Potash,
  • Myrna M. Weissman,
  • Courtney McCormick,
  • Christian D. Haudenschild,
  • Kenneth B. Beckman,
  • Jianxin Shi,
  • Rui Mei,
  • Alexander E. Urban,
  • Stephen B. Montgomery,
  • Douglas F. Levinson,
  • and Daphne Koller

  Genome Res. January 2014 24: 14-24; Published in Advance October 3, 2013, doi:10.1101/gr.155192.113
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  Integrative transcriptome sequencing identifies trans-splicing events with important roles in human embryonic stem cell pluripotency

  • Chan-Shuo Wu,
  • Chun-Ying Yu,
  • Ching-Yu Chuang,
  • Michael Hsiao,
  • Cheng-Fu Kao,
  • Hung-Chih Kuo,
  • and Trees-Juen Chuang

  Genome Res. January 2014 24: 25-36; Published in Advance October 16, 2013, doi:10.1101/gr.159483.113
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  Gene duplication and neofunctionalization: POLR3G and POLR3GL

  • Marianne Renaud,
  • Viviane Praz,
  • Erwann Vieu,
  • Laurence Florens,
  • Michael P. Washburn,
  • Philippe l'Hôte,
  • and Nouria Hernandez

  Genome Res. January 2014 24: 37-51; Published in Advance October 9, 2013, doi:10.1101/gr.161570.113
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  Natural variation in the histone demethylase, KDM4C, influences expression levels of specific genes including those that affect cell growth

  • Brittany L. Gregory and
  • Vivian G. Cheung

  Genome Res. January 2014 24: 52-63; Published in Advance November 27, 2013, doi:10.1101/gr.156141.113
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  Random replication of the inactive X chromosome

  • Amnon Koren and
  • Steven A. McCarroll

  Genome Res. January 2014 24: 64-69; Published in Advance September 24, 2013, doi:10.1101/gr.161828.113
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  Chromosome-wide profiling of X-chromosome inactivation and epigenetic states in fetal brain and placenta of the opossum, Monodelphis domestica

  • Xu Wang,
  • Kory C. Douglas,
  • John L. VandeBerg,
  • Andrew G. Clark,
  • and Paul B. Samollow

  Genome Res. January 2014 24: 70-83; Published in Advance September 24, 2013, doi:10.1101/gr.161919.113
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  The roles of cis- and trans-regulation in the evolution of regulatory incompatibilities and sexually dimorphic gene expression

  • Colin D. Meiklejohn,
  • Joseph D. Coolon,
  • Daniel L. Hartl,
  • and Patricia J. Wittkopp

  Genome Res. January 2014 24: 84-95; Published in Advance September 16, 2013, doi:10.1101/gr.156414.113
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  Small RNA profiling of Xenopus embryos reveals novel miRNAs and a new class of small RNAs derived from intronic transposable elements

  • Joanne L. Harding,
  • Stuart Horswell,
  • Claire Heliot,
  • Javier Armisen,
  • Lyle B. Zimmerman,
  • Nicholas M. Luscombe,
  • Eric A. Miska,
  • and Caroline S. Hill

  Genome Res. January 2014 24: 96-106; Published in Advance September 24, 2013, doi:10.1101/gr.144469.112
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  Maize centromeres expand and adopt a uniform size in the genetic background of oat

  • Kai Wang,
  • Yufeng Wu,
  • Wenli Zhang,
  • R. Kelly Dawe,
  • and Jiming Jiang

  Genome Res. January 2014 24: 107-116; Published in Advance October 7, 2013, doi:10.1101/gr.160887.113
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  Independent RNA polymerase II preinitiation complex dynamics and nucleosome turnover at promoter sites in vivo

  • Yoselin Grimaldi,
  • Paolo Ferrari,
  • and Michel Strubin

  Genome Res. January 2014 24: 117-124; Published in Advance December 2, 2013, doi:10.1101/gr.157792.113
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