Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome

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Figure 4.
Figure 4.

Location of SNPs within Streptococcus sp. genomes. SNPs for each GMD assembly were located by mapping reads to the concatenated Streptococcus sp. GMD-5 assembly. Contig order was determined by comparison to Streptococcus oralis reference Uo5. SNP density is measured using a sliding 1-kb window with 100-bp increments. The order of samples from outside in is Streptococcus sp. GMD-6, 4, 2, 1, 3, which is in order of least to most number of SNPs relative to the GMD-5 reference.

This Article

  1. Published in Advance March 14, 2013, doi: 10.1101/gr.142208.112 Genome Res. 23: 878-888

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