
Single nucleotide polymorphisms and read coverage across fimA of the reference strain TDC60. (Row 1) Reference gene fimA; (row 2) shared SNPs across the three single-cell genomes with 100% frequency at a coverage of 10×; (row 3) shared SNPs at a coverage of 30×; (rows 4–8) SNPs at 10× and 30× for each single-cell amplification; (rows 9–10) mapped deletions; (rows 11–13) mapped reads; (row 14) mapped 454 reads.











