DNA methylation profiling in human B cells reveals immune regulatory elements and epigenetic plasticity at Alu elements during B-cell activation

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Figure 3.
Figure 3.

B-lymphocyte activation establishes DNA methylation reprogramming that poises memory B cells for recall responses. (Top) Heat maps displaying hierarchical clustering of genes differentially expressed (ANOVA P < 0.01 and fold change > 3) and genomic features with differential methylation scores (ANOVA P < 0.01). The total number of genes or genomic features is indicated. (Middle) PCA analysis of the corresponding differentially expressed genes or differentially methylated genomic features. Each circle represents an individual MIRA-chip sample; cell types are represented by different colors. x- and y-axes represent first and second principal components, respectively. The degree of variance in each principal component is indicated in parentheses. (Bottom) Analysis of genomic features by average score in naive B cells (N) vs. PC; naive B cells (N) vs. memory B cells (M); and memory B cells (M) vs. PC. The bar graph displays the number of genomic features with increased methylation (up) in red and decreased methylation (down) in green.

This Article

  1. Genome Res. 23: 2030-2041

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