Identifying multiple causative genes at a single GWAS locus

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Figure 1.
Figure 1.

Mean arterial pressure (MAP) (A), systolic blood pressure (SBP) (B), and diastolic blood pressure (DBP) (C) measured by radiotelemetry in conscious WT and mutant SS rat strains on 4% NaCl diet (n = 8–25 per strain). Data are presented as mean BP ± SEM. (*) P < 0.05, (**) P < 0.01, and (***) P < 0.001 vs. WT as determined by one-way ANOVA followed by a Holm-Sidak post-hoc test. (D) Rats were placed in metabolic cages overnight to acclimate, followed by a 24-h urine collection. Data are presented as mean protein excretion ± SEM (n = 8–25 rats per strain). (*) P < 0.05 and (***) P < 0.001 vs. WT as determined by one-way ANOVA followed by a Holm-Sidak post-hoc test. (E) BP and renal damage are linked with multiple AGTRAP-PLOD1 locus genes in human association studies and mutant SS rat strains. For human, genes were considered linked to a phenotype if an associated SNP or SNPs in LD (r2 > 0.6) with an associated SNP caused nonsynonymous mutations or were significantly associated with expression of a gene. Blue lines indicate decreased BP and/or proteinuria associated with a gene in the rat. Red lines indicate increased BP and/or proteinuria associated with a gene in the rat.

This Article

  1. Genome Res. 23: 1996-2002

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