Estimating inbreeding coefficients from NGS data: Impact on genotype calling and allele frequency estimation

(Downloading may take up to 30 seconds. If the slide opens in your browser, select File -> Save As to save it.)

Click on image to view larger version.

Figure 5.
Figure 5.

Estimated SFS on the analyzed rice population. SFS was estimated on the four populations using called genotypes (CG) and the Nielsen et al. (2012) method (SFS). In both cases, two priors were used: random mating (HWE) and inferred per-individual inbreeding estimates (F).

This Article

  1. Published in Advance August 15, 2013, doi: 10.1101/gr.157388.113 Genome Res. 23: 1852-1861

Preprint Server



Current Issue

  1. March 2026, 36 (3)
  1. Current Issue
  1. Alert me to new issues of Genome Research