Characteristic features of the DNA methylomes between Arabidopsis thaliana and soybean. (A) Fraction of methylated cytosines for each context as a proportion of that context genome wide. (B) The DNA methylation present in the soybean methylome is highly enriched for CHG and CHH methylation. (C) A circle plot of gene density, transposon density, FPKMs, mCG, mCHG, mCHH, and 24-nt smRNAs for LD. (Red lines) Regions from the 59 Mya whole-genome duplication. (Blue lines) Regions from the recent whole-genome duplication 13 Mya. (D) Weighted methylation levels for early and recent whole-genome duplications (WGD) for the entire duplicated regions and genes and exons within those duplicated regions. (E,F) Distance in Mb of duplicated regions from the centromeres.
