Efficient de novo assembly of large genomes using compressed data structures

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Figure 2.
Figure 2.

Reference string coverage analysis for the C. elegans N2 assembly. For string lengths from 50 bp up to 5000 bp, 10,000 strings were sampled from the consensus-corrected C. elegans reference genome. The proportion of the strings found in the SGA, Velvet, ABySS, and SOAPdenovo assemblies is plotted.

This Article

  1. Published in Advance December 7, 2011, doi: 10.1101/gr.126953.111 Genome Res. 22: 549-556

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