
DNA methylation associated with rice DH sites. We plotted the ratio of methylated C to total C sites in DH sites and in 1000-bp regions flanking the DH sites. The ratio of methylated C was adjusted by the length. (A) DNA methylation associated with all rice DH sites associated with seedling tissue. (B) Seedling-specific and callus-specific DH sites within promoters showed higher levels of methylation than the average of all seedling DH sites within promoters. Randomly selected 3061 DH sites within promoters were used as a control.











