Core promoter T-blocks correlate with gene expression levels in C. elegans

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Figure 7.
Figure 7.

Highly expressed genes have both a preponderance of T-blocks and a precise SL1 motif. In each heat map, genes are mapped onto a plane of the number of T-blocks (and A-blocks) and the fuzziness of the SL1 motif. SL1 fuzziness is determined by dividing the set into 10 equally populated groups according to the P-value of the best match of the SL1 motif to the gene's core promoter (see Methods). The heat maps correspond to the number of T-blocks (top) and A-blocks (bottom) for all genes (A,E), highly expressed genes (B,F), maternally expressed genes (C,G), and embryonically expressed genes (D,H). The latter three groups are mutually exclusive by definition (see Methods).

This Article

  1. Genome Res. 21: 707-717

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