Variety of genomic DNA patterns for nucleosome positioning

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Figure 8.
Figure 8.

Counter-phase AA/TT NPS and anti-NPS correlations predict subsets of nucleosome locations. Regular (black trace) and anti- (red trace) counter-phase AA/TT correlations are shown for composite subsets of nucleosomes defined by K-means clustering (from −500 to +1000 bp) of in vivo patterns for genes aligned by their TSS (Zhang et al. 2011). The gray-filled background shows the composite nucleosome distribution for each cluster of genes.

This Article

  1. Published in Advance July 12, 2011, doi: 10.1101/gr.116228.110 Genome Res. 21: 1863-1871

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