Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity

(Downloading may take up to 30 seconds. If the slide opens in your browser, select File -> Save As to save it.)

Click on image to view larger version.

Figure 5.
Figure 5.

Distal cell-type selective open chromatin contains functionally relevant motifs and is linked to cell-type specific expression. (A) Top motifs enriched (P-value < 1 × 10−9) in cell-type selective open chromatin. Expression rank reflects the transcription factor's expression level in that cell type relative to all other cell types. (B) Distribution of expression values for genes closest to distal cell-type selective open chromatin sites (>2 kb from a TSS) from each cell type (x-axis) for that cell type (blue box plots). Similar distributions were calculated for these genes in the six other cell types lacking the distal open chromatin sites (green box plots). Asterisk indicates significant difference (pairwise T-tests).

This Article

  1. Genome Res. 21: 1757-1767

Preprint Server