The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

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Figure 1.
Figure 1.

Read-based and locus-based traversals. Read-based traversals provide a sequencer read and its associated reference data during each iteration of the traversal. Locus-based traversals are provided with the reference base, associated reference ordered data, and the pileup of read bases at the given locus. These iterations are repeated respectively for each read or each reference base in the input BAM file.

This Article

  1. Published in Advance July 19, 2010, doi: 10.1101/gr.107524.110 Genome Res. 20: 1297-1303

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