Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control

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Figure 3.
Figure 3.

Dinucleotide mutational profile of repetitive and nonrepetitive sequence, normalized by dinucleotide abundance. The vertical axis represents the fraction of SNP-callable locations that are polymorphic (averaged across all isolates for a species), relative to the appropriate reference genome (RS for C. immitis and RMSCC_3488 for C. posadasii). SNP rates for all dinucleotides are higher in repetitive sequence and also in C. posadasii isolates. In addition, CpG and CpC show the highest mutational rates.

This Article

  1. Published in Advance June 1, 2010, doi: 10.1101/gr.103911.109 Genome Res. 20: 938-946

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