Table 3.
Coverage and accuracy of SNP calling without and with dbSNP information in prior probability
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The coverage and accuracy were measured by Illumina 1M Beadchip genotyped sites. We set a prior SNP rate of 0.1 for the dbSNP known heterozygous genotypes and 0.05 for homozygous SNP sites. A Q10 filter was applied.
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FN, false-negative; FP, false-positive.
