De novo fragment assembly with short mate-paired reads: Does the read length matter?

Click on image to view larger version.

Table 5.

Mapping of the 4136 genes from E. coli into theoretical repeat graph and repeat graph constructed by EULER-USR and Velvet for the ECOLI data set

Click on table to view larger version.

Table 5.

  • See Table 1 for a description of the parameters. We show the number of genes that are contained entirely within the constructed contigs.

This Article

  1. Published in Advance December 3, 2008, doi: 10.1101/gr.079053.108 Genome Res. 19: 336-346

Preprint Server



Current Issue

  1. March 2026, 36 (3)
  1. Current Issue
  1. Alert me to new issues of Genome Research