De novo fragment assembly with short mate-paired reads: Does the read length matter?

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Table 4.

The results of read threading for BAC50 data set

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Table 4.
  • Reads are classified into four categories: correct/correct (if threading does not change a correct read), correct/incorrect (if threading turns a correct read into incorrect), incorrect/correct (if threading turns an incorrect read into correct), and incorrect/incorrect (if threading turns an incorrect read into an incorrect read). The table classifies reads in each of these four categories depending on how many edges in the repeat graph they span.

This Article

  1. Genome Res. 19: 336-346

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