De novo fragment assembly with short mate-paired reads: Does the read length matter?

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Figure 5.
Figure 5.

Mapping reads to the paths in the repeat graph. (A) A read maps to a single edge. (B) A read maps to two paths, and the closest one is chosen. (C) A read may be mapped to two similar paths implying that trimming is required.

This Article

  1. Published in Advance December 3, 2008, doi: 10.1101/gr.079053.108 Genome Res. 19: 336-346

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