De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae

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Table 1.

Sequencing and assembly results for PtoDC3000 and Por1_6

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Table 1.
  • The amount of sequence obtained (in base pairs) for each pathovar is shown. Read quality metrics (length, error rate, paired-end span) are also shown. N50 values are indicated for each step in the assembly process.

    (NA) Not applicable.

  • aBased on total Newbler genome size of 5,588,216 bp; end overlap between contigs may cause this to be an overestimate.

This Article

  1. Genome Res. 19: 294-305

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