Genomic copy number determination in cancer cells from single nucleotide polymorphism microarrays based on quantitative genotyping corrected for aneuploidy

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Table 1.

Validation against 10 acute lymphoblastic leukemia samples with known karyotype and comparison to three other commonly used methods

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Table 1.
  • Output from the algorithms was queried for the aberrations detected by karyotype. OverUnder was run with a window size of 101 (default) and 51 (adjusted). Other algorithm settings (both default and adjusted) can be found in Methods.

This Article

  1. Genome Res. 19: 276-283

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