Figure 4.
A deletion in a non-clonal sample. Illumina reads are in blue, read pairs are connected by gray lines. Reference mismatches are shown as red dots. Capillary reads (from CIGAR data) of the same sample are in cyan, with deletion as red triangles. Some of the capillary sequences do not show the deletion, and some of the Illumina reads extend into the gap created by the deletion; the presence of both variants within the sample is thus indicated by both technologies. The sample is from P. falciparum, all data generated at the Sanger Institute.
