Table 3.
Motifs significantly enriched in ChIP-chip data sets for which the TF profiled by ChIP does not have an available PBM-derived motif
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The entries in all three columns are as in Table 1. Possible explanations of the ChIP-chip data are provided.
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aWe use the term “literature motif” to refer to a TF's DNA binding motif as obtained from small-scale experiments and reported in the Saccharomyces Genome Database (Cherry et al. 1998).
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bWe use the term “coregulation” to refer to any situation in which several TFs regulate, either positively or negatively, a set of genes.
