Motifs significantly enriched in ChIP-chip data sets for which the profiled TF has a PBM-derived motif available, and this motif is significantly enriched
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In each of the three columns, the left part (e.g., Abf1_YPD) refers to a ChIP-chip data set and the right part (e.g., Abf1) refers to the TF(s) with PBM-derived motif(s) significantly enriched in that data set (i.e., with an AUC ≥ 0.65 and an associated P-value ≤ 0.001). Possible explanations of the ChIP-chip data are provided.
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aWe use the term “coregulation” to refer to any situation in which several TFs regulate, either positively or negatively, a set of genes.
