5′-Transducing SVA retrotransposon groups spread efficiently throughout the human genome

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Table 2.

SVA 5′ transduction events that involved RNA splicing

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^aHuman specificity was assessed by the presence of a gap in the Genome Browser chimpanzee net track.
^bThe position of the splice acceptor AG dinucleotide (boldface) in SVA_rep is given in parentheses for elements resulting from splicing into SVA sequence. For these elements, the splice acceptor sequence is taken from the respective subfamily consensus in cases where the source element is no longer present in the human genome.
^c3′ part of the exon only.
^dPan troglodytes genome build 2006.
^ePHLPP2 exons 3 and 4.
^fAK124678 exon 1 and aberrantly spliced exon 2.
NA, not annotated.

Published in Advance August 3, 2009, doi: 10.1101/gr.093435.109 Genome Res. 2009. 19: 1992-2008

5′-Transducing SVA retrotransposon groups spread efficiently throughout the human genome