Evidence-based gene predictions in plant genomes

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Table 2.

Gene-level assessments in A. thaliana

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Table 2.

  • Sensitivity (Sn) is measured on the FLcDNA-based standard genes, and specificity (Sp) measured on the TAIR7 set. The CDS Sn and Sp values are calculated using identical proteins only. Two overlapping genes on opposite strands were classified as “missed” genes to each other if both have multiple exons. Arabi indicates Arabidopsis; AllEST, combination of Arabidopsis ESTs and other dicot ESTs; and OProtein, all cross-species proteins. All values are percentages.

  • aAll split genes are measured on FLcDNA-standard genes, except the Arabi-cDNA and the All-evidence sets, which are measured using TAIR7 set.

This Article

  1. Published in Advance June 18, 2009, doi: 10.1101/gr.088997.108 Genome Res. 19: 1912-1923

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