Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals

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Figure 3.
Figure 3.

The area around the second lowest value of GraphicE on chromosome 3. Vertical bars represent the values for a 100-kb window positioned at their midpoint. (A) Plotted is GraphicE, whereas the expected value is either under a neutral or a background selection model, whatever was more conservative. The colors of the bars indicate whether GraphicE lie outside of a 95%, 96%, etc., confidence interval obtained through simulations. (B) Pink triangles mark recombination hotspots; blue lines correspond to genes from the RefSeq gene track of the UCSC genome browser. The closest gene is EPHA6. (CE) The values for Graphic, human–chimpanzee divergence, and the recombination rate in cM/Mb are plotted.

This Article

  1. Genome Res. 18: 1020-1029

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