De novo search for non-coding RNA genes in the AT-rich genome of Dictyostelium discoideum: Performance of Markov-dependent genome feature scoring

Click on image to view larger version.

Table 2.

Candidate ncRNAs analyzed for expression

Click on table to view larger version.

Table 2.

aExpression analysis by Northern blot. (+) Presence or (−) absence of relevant hybridization signals. (ND) Indicates the hybridization probe was not expected to recognize the candidate. Length and strands are estimated from Northern blots. Strand is relative to the official v2.5 D. discoideum genome sequence.

bCharacteristics of the predicted candidates. (x) Presence of DUSE within 150 nt of flanking sequences.

cRank measured by standard competition ranking for the M0 and M1 searches, respectively.

This Article

  1. Genome Res. 18: 888-899

Preprint Server