Extensive variation between inbred mouse strains due to endogenous L1 retrotransposition

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Table 1.

Categorization and coverage of 26 million WGS sequence traces

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Table 1.

(A) WGS traces from four unassembled mouse strain genomes were aligned to the C57 reference using GMAP and a genome variation discovery pipeline. Resulting categories of alignment were tabulated for each alternative strain (see Supplemental material). (B) A summary of the coverage by clustered sequence traces mapped to the reference assembly, whose size in mm8 release is 2,644,077,689 nt.

This Article

  1. Genome Res. 18: 869-880

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