Recombination rate estimation in the presence of hotspots

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Figure 6.
Figure 6.

Output of rhomap for the HLA and MS32 regions. Plots A and C show the recombination rate estimates of the HLA and MS32 regions respectively, with the estimated rate in blue, and (sex-averaged) sperm typing rate in red. SNP locations are shown as red marks. Estimates from rhomap were converted to cM/Mb by assuming Ne = 10,000. Also shown in plot C is the detail of the NID2a/b and MSTM1a/b estimates. Plots B and D show the average number of hotspots per sample per kb for the same regions.

This Article

  1. Published in Advance July 10, 2007, doi: 10.1101/gr.6386707 Genome Res. 17: 1219-1227

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