Genome-wide comparative analysis of copia retrotransposons in Triticeae, rice, and Arabidopsis reveals conserved ancient evolutionary lineages and distinct dynamics of individual copia families

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Figure 5.
Figure 5.

Distribution of copia element insertion times. Estimated insertion times were divided into bins of 100,000 yr. (A) The distribution of rice copia elements can be described as a hyperbolic function based on the assumption that retrotransposon sequences are at least partially removed from the genome at a constant rate. The curve represents the best fit for the starting value (43.6) and the half-life (796,000). (B) Insertion distribution of 87 copia elements from Triticeae (wheat and barley). The distribution is not similar to a hyperbolic distribution.

This Article

  1. Genome Res. 17: 1072-1081

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