Characterization and predictive discovery of evolutionarily conserved mammalian alternative promoters

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Table 1.

Overrepresented hexamers (relative to other promoter type in same CpG class)

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Table 1.

Only hexamers occurring in at least 10% of promoters of the given type are included.

aOverlapping hexamers are merged (most statistically significant hexamer is underlined).

bValues refer to the most significant (underlined) hexamer.

cNo strand bias was detected, so occurrences of the hexamer and its complement were combined.

Dots in final four columns indicate whether the underlined motif is overrepresented relative to simulated sequences of the same dinucleotide composition (cf. Supplemental Table S2).

This Article

  1. Genome Res. 17: 145-155

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