Carol Soderlund; William Nelson; Austin Shoemaker; Andrew Paterson

SyMAP: A system for discovering and viewing syntenic regions of FPC maps

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Figure 3.

(A) The acceptable function determines whether a candidate chain qualifies. (B) The chain finder function adjusts the parameters to detect candidate chains. It calls the dp_chains, which is the dynamic programming function to find candidate chains, and it calls cull_chain, which removes anchors of the chain from the DAG and saves the chain for output.