Class 4, intergenic MPSS signatures for known miRNAs
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For each miRNA with an associated MPSS signature downstream, the neighboring protein-coding genes, the 17-nt MPSS signature, nucleotide distance downstream of the precursor 3′-end, and expression level are shown. The expression level is normalized to show how many transcripts, containing the signature, occurred for every million different transcripts captured within the library. Tandemly duplicated miRNAs were kept in this table to show the specific small RNA, 5′-RACE, and 3′-RACE results for each gene despite having the same MPSS signature. 5′-RACE and 3′-RACE values are indicated as Yes, No, or NT (Not Tested) (Xie et al. 2005). The small RNAs in ASRP represent the number of clones related to that particular miRNA gene (Gustafson et al. 2005).
