Table 2.
Number of homoeologous gene pairs identified in the cotton EST data set
|
A |
D |
AT |
DT |
Contig category totals within unmodified contigs (AGCol) |
Number of changes to contig categories by merging putatively orthologous contigs/singletons into a single contig |
Total number of classified contigs (ISU) |
|
|---|---|---|---|---|---|---|---|
| × | 3928 | -979 | 2949 | ||||
| × | 8626 | -1140 | 7486 | ||||
| × | × | 1033 | -314 | 719 | |||
| × | × | 933 | -149 | 784 | |||
| × | × | × | × | 309 | +244 | 553 | |
| × | × | × | 412 | +367 | 779 | ||
| × | × | × | 479 | +261 | 740 | ||
| × | × | 979 | +592 | 1571 | |||
| × | 5271 | 0 | 5271 | ||||
| Total no. of contigs
|
|
|
|
22,030
|
|
20,852
|
|
-
AGCoL and ISU refer to their respective EST assemblies (http://agcol.arizona.edu/pave/cotton/). The ISU assembly was derived from the AGCoL Assembly as described in the text. Contigs containing only G. hirsutum ESTs could not be assigned to either AT or DT, thus the last row of the table has these two columns combined. Numbers in bold represent contigs with both A- and D-genome ESTs.
