Table 1.
Summary of Gossypium EST libraries
|
Species |
Authors |
Gossypium accession |
Library name |
Library description |
# ESTs |
Selected ESTs |
SEQ |
QUAL |
|---|---|---|---|---|---|---|---|---|
| G. arboreum (A2) | Wing et al., Arpat et al. | 8401 | GA_Ea | 7-10 dpa developing fibers (normalized) | 46,603 | 31,242 | f+r | y |
| Subtotal no. ESTs | 46,603 | 31,242 | ||||||
| G. raimondii (D5) | Udall et al. | GN34 | GR_Ea | Whole seedlings with first true leaves | 33,671 | 29,177 | f+r | y |
| Udall et al. | GN34 | GR_Eb | -3 dpa buds to +3 dpa bolls | 35,061 | 31,036 | f+r | y | |
| Subtotal no. ESTs | 68,732 | 60,213 | ||||||
| G. hirsutum (AD1) | Allen | Coker 312 | GH_MDI | 8-10 dpa boll (irrigated) | 1144 | 868 | f | y |
| Allen | Coker 312 | GH_MDDS | 8-10 dpa boll (drought stressed) | 1238 | 773 | f | y | |
| Allen & Payton | Coker 312 | GH_LDI | 15-20 dpa boll (irrigated) | 1799 | 1324 | f | y | |
| Allen & Payton | Coker 312 | GH_LDDS | 15-20 dpa boll (drought stressed) | 1409 | 753 | f | y | |
| Blewitt & Burr | Acala Maxxa | GH_BNL | Fiber 5 d post-anthesis (normalized) | 8022 | 7590 | x | n | |
| Chapman | Stv 7A gl | GH_ECT | 18 h etiolated seedlings | 2880 | 2685 | x | y | |
| Dowd & McFadden | Delta Emerald | GH_CRH | Root and hypocotyls | 1464 | 1309 | f | y | |
| Dowd & McFadden | Delta Emerald | GH_CFUS | RH tissues infected with Fusarium oxysporum | 820 | 641 | f+x | y | |
| Faivre-Nitschke & Dennis | Sicot | GH_LSL | Sicot S9i leaves, late season | 1810 | 1707 | f | y | |
| Gou & Chen | Xu-142 | GH_FOX | Ovule (0-5 dpa) and fiber (1-22 dpa) | 7997 | 6277 | f | y | |
| Haigler & Wilkerson | Delta Pine 90 | GH_SCW | Secondary vs. primary fibers (suppr. subtr. hyb.) | 7385 | 7372 | x | y | |
| Klueva et al. | Coker 312 | GH_SDL | Seedling (control) | 1918 | 1502 | f | y | |
| Klueva & Nguyen | Coker 312 | GH_SDLD | Seedling (drought stressed) | 1142 | 475 | f | y | |
| Klueva & Nguyen | Coker 312 | GH_SDCH | Seedling (chilling stressed) | 576 | 138 | f | y | |
| Liu & Dennis | Delta Pine 16 | GH_IME | Immature embryo | 1536 | 856 | x | y | |
| Patil, Essenberg & Pierce | Im216 | GH_IMX | Leaf 8, 14, 20, 30, 45, 60 hpi Xanthomonas | 1134 | 685 | x | y | |
| Phillips, Essenberg & Pierce | AcB4BInb7 | GH_ACXE | Leaf 8+14 hpi Xanthomonas | 647 | 439 | x | y | |
| Phillips, Essenberg & Pierce | AcB4BInb7 | GH_ACXM | Leaf 20+30 hpi Xanthomonas | 1328 | 863 | x | y | |
| Phillips, Essenberg & Pierce | AcB4BInb7 | GH_ACXL | Leaf 45+60 hpi Xanthomonas | 862 | 682 | x | y | |
| Suo & Xue | Zhongmian12 | GH_SUO | 0-dpa ovule | 1240 | 1217 | x | n | |
| Trolinder | T25 | GH_pAR | Leaves | 1230 | 904 | x+y | y | |
| Taliercio | DES119 | GH_STEM | Mature stem | 8643 | 6187 | x+y | y | |
| Ni & Trelease | DP62 | GH_ECOT | Etiolated cotyledon | 2772 | 2338 | x | y | |
| Wan & Wing | 91-D-92 | GH_CBAZ | Cotton boll abscission zone cDNA Library | 1306 | 1306 | f | y | |
| Wu & Dennis | Delta Pine 16 | GH_CHX | Ovules -3 to 0 dpa cycloheximide | 7631 | 7472 | x+y | y | |
| Wu & Dennis | Delta Pine 16 | GH_OCF | Ovules 0 dpa | 867 | 820 | f | y | |
| Wu & Dennis | Delta Pine 16 | GH_ON | Ovules 0 dpa normalized | 5903 | 5321 | f+r,f | y | |
| Subtotal no. ESTs | 69,853 | 62,504 | ||||||
|
|
Total no. ESTs
|
|
|
|
185,198
|
153,969
|
|
|
-
ESTs were included in the assembly after removing short (<300 bp) and low-complexity sequences. Sequencing (SEQ) was in one or both directions (f = 5′; r = 3′; x,y = unspecified). Quality values (QUAL) are PHRED scores (Ewing et al. 1998) calculated from the shape and area of fluorescence intensity from each base pair when sequenced on a fluorescent automated sequencer.
