Table 3.
RVM selection of 5-mer motifs in glucose-regulated genes
|
Recognition sequence |
Number of times picked by RVM |
Average weight |
|---|---|---|
| Up-regulated | ||
| accct | 10 | 2.4528 |
| gggag | 10 | 1.9367 |
| agtga | 10 | 1.6673 |
| gagaa | 10 | 1.3825 |
| attaa | 10 | 1.3428 |
| gaata | 10 | 1.1516 |
| gaatc | 10 | 1.0956 |
| taggt | 10 | 1.0248 |
| aatag | 10 | 0.927 |
| aatgt | 10 | 0.8825 |
| cggca | 10 | 0.8763 |
| accgt | 10 | 0.7836 |
| actct | 10 | 0.7546 |
| Down-regulated | ||
| ggata | 10 | -4.4913 |
| gataa | 10 | -3.0703 |
| tatct | 10 | -2.0260 |
| catcc | 10 | -1.2789 |
| aagat | 10 | -1.0549 |
| caatg | 10 | -1.014 |
| aatcc | 10 | -0.959 |
| gatta | 10 | -0.947 |
| gactc | 10 | -0.913 |
| catcg | 10 | -0.839 |
| cacac | 10 | -0.82 |
| cgtgg | 10 | -0.773 |
| gaccc
|
10
|
-0.721
|
