Establishing glucose- and ABA-regulated transcription networks in Arabidopsis by microarray analysis and promoter classification using a Relevance Vector Machine

Table 4.

RVM selection of place elements in ABA-regulated genes


Element ID

Number of times picked by RVM

Average weight

Recognition sequence

Potential target genes (from Supplemental Table S6)
ABRELATERD1 10 4.4946 acgtg Abiotic stress, phenylpropanoid and ABA metabolism, carbohydrate breakdown
ABREATRD22 10 3.0406 ryacgtggyr Abiotic stress
ACGTABREMOTIFA2OSEM 10 2.6213 acgtgkc Phenylpropanoid metabolism
DRE2COREZMRAB17 10 2.0471 accgac Abiotic stress, raffinose metabolism
ACGTATERD1 10 1.7750 acgt Phenylpropanoid metabolism
MYB1AT 10 1.6179 waacca
DPBFCOREDCDC3 10 1.3682 acacnng
ABREMOTIFAOSOSEM 10 1.3261 tacgtgtc Abiotic stress
SGBFGMGMAUX28
10
1.2677
tccacgtgtc

This Article

  1. Genome Res. 16: 414-427

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