A systematic model to predict transcriptional regulatory mechanisms based on overrepresentation of transcription factor binding profiles

Table 1.

Summary of the data stored in the Promoter Analysis Pipeline Database


Gene
Species
Gene loci
Transcripts
Promoters
Gene loci with multiple transcripts
Gene loci with multiple promoters
Human 20,984 24,749 22,276 2202 951
Mouse
20,830
21,172
21,089
287
227
Promoter
Human—Mouse Homology
Species
Average promoter length
Average percent of repeats
Species
Orthologous gene loci
Average percent promoter aligned
Human 10,252 45.0 Human 14,140 21.0
Mouse
10,019
36.9
Mouse
14,224
20.2

This Article

  1. Genome Res. 16: 405-413

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