Table 3.
Regions with sequence similarity to A. thaliana genes and hypothetical proteins
|
bp |
Similarity (no. of exons; no. of introns; UTRs)a |
ID #b |
Expression evidencec |
Chr |
Ka ± SE |
Ks ± SE |
Ka/Ks |
||
|---|---|---|---|---|---|---|---|---|---|
| Aa28N14 | |||||||||
| 1271 | Signal cointegrator | (5, 4) | At2g20410 | cDNA | II | 0.05 ± 0.01 | 0.15 ± 0.03 | 0.33 | |
| 401 | Myb transcription factor | (1, 0, 3′) | At4g37780 | EST, ma | IV | 0.06 ± 0.02 | 0.28 ± 0.01 | 0.21 | |
| 285 | Expressed proteine | (1, 0) | At4g25210 | cDNA | IV | 0.21 ± 0.04 | 0.15 ± 0.04 | 1.4 | |
| 818 | Expressed proteine | (1, 0) | At4g25210 | cDNA | IV | 0.07 ± 0.01 | 0.24 ± 0.04 | 0.29 | |
| 100 | Hypothetical protein | (1, 0) | At3g43470 | cDNA | III | 0.11 ± 0.04 | 0.10 ± 0.07 | 1.16 | |
| 169 | Calcineurin-like | (0, 1) | At1g52940 | ma | I | — | — | NA | |
| 247 | Expressed proteine | (1, 0) | At5g67350 | cDNA | V | 0.05 ± 0.02 | 0.21 ± 0.06 | 0.23 | |
| 137 | Expressed protein | (0, 1) | At2g03330 | ma, mpss | II | — | — | NA | |
| 153 | Expressed protein | (0, 1) | At2g26610 | MPSS | II | — | — | NA | |
| 172 | Lipid recognition | (1, 1) | At5g06480 | cDNA | V | 0.50 ± 0.13 | 0.91 ± 0.57 | 0.55 | |
| 79 | Lipid recognition | (0, 0, 5′) | At5g06480 | cDNA | V | — | — | NA | |
| 224 | Expressed protein | (0, 0, 5′) | At3g42150 | cDNA | III | — | — | NA | |
| 167 | Expressed protein | (0, 1) | At4g10080 | cDNA | IV | — | — | NA | |
| 297 | Hypothetical protein | (1, 0) | At5g35695 | — | V | 0.08 ± 0.02 | 0.35 ± 0.10 | 0.22 | |
| 431 | β-Ureidopropionase | (1, 0) | At5g64370 | cDNA | V | 0.02 ± 0.01 | 0.16 ± 0.06 | 0.12 | |
| 331 | Expressed protein | (2, 1) | At2g20120 | cDNA | II | 0.14 ± 0.04 | 0.15 ± 0.06 | 0.98 | |
| Cr8F1 | |||||||||
| 235 | Vacuolar ATPase | (0, 0, 5′) | At3g42050 | cDNA | III | — | — | NA | |
| 180 | Vacuolar ATPase | (0, 0, 5′) | At3g42050 | cDNA | III | — | — | NA | |
| 116 | Expressed protein | (1, 0) | At4g16810 | EST | IV | 0.24 ± 0.06 | 0.19 ± 0.095 | 1.27 | |
| 366 | Cellulose synthase | (1, 0) | At2g21770 | cDNA | II | 0.88 ± 0.10 | 1.5 ± 0.38 | 0.59 | |
| Op44L14 | |||||||||
| 178 | Hypothetical protein | (1, 0) | At4g09660 | — | IV | 0.11 ± 0.03 | 0.38 ± 0.16 | 0.29 | |
| 91 | Expressed protein | (0, 0, 5′) | At3g42150 | cDNA | III | — | — | NA | |
| 700 | Exostosin | (2, 1) | At3g42180 | EST,MPSS | III | 0.04 ± 0.01 | 0.18 ± 0.06 | 0.22 | |
| 136 | Vacuolar ATPase | (0, 0, 5′) | At3g42050 | cDNA | III | — | — | NA | |
| 157 | Vacuolar ATPase | (0, 0, 5′) | At3g42050 | cDNA | III | — | — | NA | |
| 111 | Expressed protein | (1, 1) | At1g12650 | cDNA | I | 0.06 ± 0.04 | 0.31 ± 0.16 | 0.20 | |
| 409 | Expressed proteind | (2, 1) | At1g33265 | cDNA | I | 0.04 ± 0.01 | 0.20 ± 0.06 | 0.19 | |
| 894 | Plastocyanin-liked | (2, 1) | At3g53330 | — | III | 1.24 ± 0.11 | 1.54 ± 0.36 | 0.80 | |
| 1178 | F-box proteind | (2, 1) | At3g44060 | — | III | 0.24 ± 0.02 | 0.34 ± 0.04 | 0.71 | |
| 190 | Syntaxin-related protein | (1, 1) | At3g44180 | — | III | 0.18 ± 0.05 | 0.17 ± 0.08 | 1.04 | |
| 343 | Hypothetical proteine | (1, 0) | At3g09130 | — | III | 0.20 ± 0.03 | 3.45 ± 50 | 0.06 | |
| 923 | Hypothetical proteine | (1, 0) | At3g42786 | — | III | 0.21 ± 0.02 | 0.37 ± 0.06 | 0.56 | |
| 268
|
Protein phosphatase
|
(0, 0, 3′)
|
At2g20630
|
cDNA
|
II
|
—
|
—
|
NA
|
|
-
↵a Identity of highest scoring match over the indicated number of basepairs (bp); parentheses, the number of overlapping exons and introns, as well as similarity in the upstream and downstream (5′ and 3′) untranslated regions (UTRs).
-
↵b For cases where the best match is in A. thaliana, the gene identity number, expression evidence, and chromosome location are shown.
-
↵d Also part of a larger hypothetical protein formed from fragments of At1g33265, At3g53330, and At3g44060.
-
↵e Gene has no introns. (SE), Standard Error; (NA), not applicable.
