Table 2.
Percent nucleotide and protein identity of conserved genes
|
Gene # |
Putative protein function |
At:Aa |
At:Cr |
At:Op |
Aa:Cr |
Aa:Op |
Cr:Op |
||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| nt | aa | nt | aa | nt | aa | nt | aa | nt | aa | nt | aa | ||||||||
| 1 | Transducin familya | 97 | — | 91 | — | 91 | — | 91 | — | 91 | — | 95 | — | ||||||
| 2 | Actin-related ARP6 | 96 | 98 | 93 | 95 | 89 | 92 | 94 | 96 | 89 | 92 | 90 | 93 | ||||||
| 3 | hAT-like transposaseb | 94 | 94 | 88 | 90 | 88 | 92 | 91 | 92 | 90 | 92 | 87 | 88 | ||||||
| 4 | Exostosin family | 95 | 96 | 90 | 90 | 90 | 93 | 92 | 94 | 90 | 94 | 89 | 92 | ||||||
| 5 | Pentatricopeptide repeat | 92 | 92 | 86 | 82 | 87 | 85 | 88 | 84 | 88 | 85 | 88 | 87 | ||||||
| 6 | Plasma membrane ATPase | 96 | 98 | 93 | 97 | 93 | 97 | 93 | 97 | 93 | 97 | 93 | 98 | ||||||
| 7 | Transducin/WD-40 repeat | 87 | 89 | ||||||||||||||||
| 8 | SNF2 domain-containing | 90 | 90 | ||||||||||||||||
| 9 | Unknown | 80 | 74 | ||||||||||||||||
| 10 | Phd finger | 93 | 94 | ||||||||||||||||
| 11 | Expressed | 74 | 75 | ||||||||||||||||
| 12 | Ring-box | 83 | 83 | ||||||||||||||||
| 13 | Galactokinase | 93 | 96 | ||||||||||||||||
| 14 | Zinc knuckle | 84 | 83 | ||||||||||||||||
| 15 | LRR transmembrane kinase | 87 | 92 | ||||||||||||||||
| CI
|
ABC transporter
|
|
|
|
|
90
|
97
|
|
|
|
|
|
|
||||||
-
↵a Protein alignments are uncertain due to ambiguities in intron/exon annotation.
-
↵b For O. pumila, percent identity is the average over the two copies of the hAT gene (Fig. 3). (At) A. thaliana; (Aa) A. arenosa; (Cr) C. rubella; (Op) O. pumila; (nt) % nucleotide identity; (aa) % amino acid identity; (—) not applicable.
