Table 7.
Empirical power and average number of false positives generated by each method in 50 simulated data sets simulated under Scenario 3 but with cases chosen only from one population
|
Scenario 3: All cases from one population |
||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
CHISQ |
GC |
SLR |
BLR |
STR2 |
AM2 |
||||||
| All SNPs included | ||||||||||||
| Power (%) | 98 | 0 | 86 | 92 | 92 | 98 | ||||||
| Average no. false +ve | 52 | 0 | 6 | 13 | 7 | 29 | ||||||
| Causal SNP excluded | ||||||||||||
| Power (%) | 98 | 0 | 68 | 80 | 78 | 94 | ||||||
| Average no. false +ve | 52 | 0 | 6 | 14 | 7 | 31 | ||||||
| Gene 1 excluded | ||||||||||||
| Average no. false +ve
|
52
|
0
|
6
|
15
|
6
|
30
|
||||||
