Logistic regression protects against population structure in genetic association studies

Table 2.

The total number of false positives generated by each method over the 50 simulated data sets for each demographic scenario when all 10 SNPs from gene 1 are included



Total false positives
FST/struct
CHISQ
GC
SLR
BLR
STR2
AM2
(1) No structure 0 0 0 0 0 0
(2) Low/eq 3 2 0 0 1 2
(3) High/eq 45 3 0 0 1 1
(4) Low/un 0 0 0 0 0 0
(5) High/un
2
0
1
0
1
1

This Article

  1. Genome Res. 16: 290-296

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