Table 1.
106 computer-predicted SRF target genes
|
Gene symbol |
RefSeq |
Gene symbol |
RefSeq |
|---|---|---|---|
| 2610024e20Rik | NM_146084 | Hoxd11 | NM_008273 |
| 3200002m19Rik | NM_027532 | Hspb7 | NM_013868 |
| 5730449L18Rik | NM_025677 | Igf2 | NM_010514 |
| Actr3 | NM_023735 | Il13r | NM_133990 |
| Acvr1b | NM_007395 | Il17rb | NM_019583 |
| Adm | NM_009627 | Impact | NM_008378 |
| Agpt2 | NM_007426 | Itga5 | NM_010577 |
| Ankmy2 | NM_146033 | Itgb1bp2 | NM_013712 |
| Aoc3 | NM_009675 | Itm2b | NM_008410 |
| Apex | NM_009687 | Ldb2 | NM_010698 |
| Arhe | NM_028810 | Lef1 | NM_010703 |
| Arx | NM_007492 | Lzf | NM_133185 |
| Atp2a2 | NM_009722 | Mrgprf | NM_145379 |
| Bat1 | NM_019693 | Mrrf | NM_026422 |
| Bc004636 | NM_145524 | Mrvil | NM_010826 |
| Bin1 | NM_009668 | Mut | NM_008650 |
| Capza3 | NM_007605 | Ndufs1 | NM_145518 |
| Car3 | NM_007606 | Nfatc4 | NM_023699 |
| Carf | NM_172407 | Nfyb | NM_010914 |
| Casq1 | NM_009813 | Nipsnap3a | NM_025623 |
| Cdh11 | NM_009866 | Nol5a | NM_024193 |
| Cdk5rap3 | NM_030248 | P2rx1 | NM_008771 |
| Cfl1 | NM_007687 | Pfn1 | NM_011072 |
| Chad | NM_007689 | Pln | NM_023129 |
| Copeb | NM_011803 | Plp2 | NM_019755 |
| Coro1a | NM_009898 | Pogz | NM_172683 |
| Cs | NM_026444 | Polr2g | NM_026329 |
| Ctgf | NM_010217 | Ppp6c | NM_024209 |
| Cuta | NM_026307 | Prss25 | NM_019752 |
| D130064h19Rik | NM_172593 | Ptpla | NM_013935 |
| D14ertd231e | NM_153414 | Rec8l1 | NM_020002 |
| Dm15 | NM_032418 | Ring1 | NM_009066 |
| Dnajb1 | NM_018808 | Rrad | NM_019662 |
| Dok1 | NM_010070 | Sdc4 | NM_011521 |
| Dtna | NM_010087 | Shkbp1 | NM_138676 |
| Dusp6 | NM_026268 | Slc15a2 | NM_021301 |
| Dvl2 | NM_007888 | Slc2a4 | NM_009204 |
| Efha1 | NM_028643 | Slc25a1 | NM_153150 |
| Eef1b2 | NM_018796 | Slc4a2 | NM_009207 |
| Elf5 | NM_010125 | Sox5 | NM_011444 |
| Enh | NM_019808 | Tcf2 | NM_009330 |
| Etv1 | NM_007960 | Tcfap2b | NM_009334 |
| Fbln5 | NM_011812 | Tgfb1i1 | NM_009365 |
| Fen1 | NM_007999 | Tln1 | NM_011602 |
| Fgf10 | NM_008002 | Tspan13 | NM_025359 |
| Fhl1 | NM_010211 | Tnnc1 | NM_009393 |
| Fhl2 | NM_010212 | Trappc4 | NM_021789 |
| Galnt3 | NM_015736 | Trip6 | NM_011639 |
| Gif | NM_008118 | Txnip | NM_023719 |
| Gpc4 | NM_008150 | Urod | NM_009478 |
| Hnrpab | NM_010448 | Wdr12 | NM_021312 |
| Hoxb5 | NM_008268 | Wwtr1 | NM_133784 |
| Hoxc6
|
NM_010465
|
Zcchc12
|
NM_028325
|
-
Italicized genes (89) had conserved CArG plus flanking sequences PCR-amplified for experimental validation. All but six were amplified and authenticated by sequence analysis. The remaining 17 targets (bold italicized) have conserved CArG sequences within coding exons and were not pursued (see Methods for further details).
