Table 1.
General features of the Sodalis genome
|
|
Chromosome |
pSG1 |
pSG2 |
pSG3 |
|---|---|---|---|---|
| Size (bp) | 4,171,146 | 83,306 | 27,240 | 10,810 |
| GC content (%) | 54.7 | 48.9 | 44.7 | 47.8 |
| Predicted CDS | 2432 | 54 | 23 | 7 |
| Assigned function | 1465 | 23 | 7 | 1 |
| Conserved hypothetical | 484 | 6 | 5 | 0 |
| Unknown function | 221 | 25 | 11 | 4 |
| Phage related | 262 | 0 | 0 | 2 |
| Coding density (%) | 50.9 | 41.5 | 48.1 | 25 |
| Average CDS size (bp) | 873 | 641 | 569 | 386 |
| Pseudogenes | 972 | 23 | 5 | 3 |
| tRNA gene | 69 | 0 | 0 | 0 |
| rrn operon | 7 | 0 | 0 | 0 |
| 16S-23S-5S rRNA | 6 | — | — | — |
| 16S-23S-5S-5S rRNA
|
1
|
—
|
—
|
—
|
