A computational genomics approach to identify cis-regulatory modules from chromatin immunoprecipitation microarray data—A case study using E2F1

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Table 3.

Promoters bound by both E2F1 and AP-2α

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Table 3.

aAllowed gap distance between two binding regions of E2F1 and AP-2α.

bRandom sampling of the data points from the E2F1 and AP-2α arrays was used to generate 1000 random data sets, then 590 peaks were identified at the top 10% level. The overlap targets were then determined using the peaks from the random data sets (a P-value was estimated to be <10−6).

This Article

  1. Genome Res. 16: 1585-1595

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