Table 1.
Compilation of U11/U12 snRNP and DExD/H-box (DEAD) proteins identified in the analyzed genomes
|
Family |
Human |
Mouse |
Rat |
Chicken |
Fugu |
Zebrafish |
Tetraodon |
Ciona |
|---|---|---|---|---|---|---|---|---|
| U11/U12-20 | UB20 | UB20 | UB20 | UB20 | UB20 | UB20a | UB20 | |
| UB20b | ||||||||
| U11/U12-25 | UB25 | UB25 | UB25 | UB25 | UB25 | UB25 | UB25 | |
| U11/U12–31 | UB31 | UB31 | UB31 | UB31 | UB31 | UB31 | UB31 | UB31 |
| U11/U12-35 | UB35 | UB35 | UB35 | UB35 | UB35 | UB35 | UB35 | |
| U11/U12-48 | UB48 | UB48 | UB48 | UB48 | UB48 | UB48 | UB48 | UB48 |
| U11/U12-65 | UB65 | UB65 | UB65 | UB65 | UB65 | UB65 | UB65 | UB65 |
| ABS | ABS | ABS | ABS | ABS | ABS | ABS | ABS | ABS |
| DDX26 | DDX26 | DDX26 | DDX26 | DDX26 | DDX26 | DDX26 | DDX26 | DDX26 |
| DX26b | ||||||||
| DD26B | DD26B | DD26B | DD26B | DD26B | DD26B | |||
| DDX39 | DDX39 | DDX39 | DDX39 | DDX39 | DDX39 | DDX39 | ||
| BAT1 | BAT1 | BAT1 | BAT1 | BAT1 | ||||
| DDX3XY | DDX3X | DDX3X | DDX3X | DDX3 | DDX3a | DDX3 | DDX3 | DDX3 |
| DDX3Y | DDX3Y | DDX3b | ||||||
| DDX46 | DDX46 | DDX46 | DDX46 | DDX46 | DDX46 | DDX46 | DDX46 | DDX46 |
| DDX48 | DDX48 | DDX48 | DDX48 | DDX48 | DDX48 | DDX48 | DDX48 | DDX48 |
| DHX15 | DHX15 | DHX15 | DHX15 | DHX15 | DHX15 | DHX15 | DHX15 | DHX15 |
| DHX16 | DHX16 | DHX16 | DHX16 | DHX16 | DHX16 | DHX16 | DHX16 | DHX16 |
| DHX35 | DHX35 | DHX35 | DHX35 | DHX35 | DHX35 | DHX35 | DHX35 | |
| DHX38 | DHX38 | DHX38 | DHX38 | DHX38 | DHX38 | DHX38 | DHX38 | DHX38 |
| DHX8 | DHX8 | DHX8 | DHX8 | DHX8a | DHX8a | DHX8a | DHX8 | DHX8 |
| DHX8b | DHX8b | DHX8b | ||||||
| DHX9 | DHX9 | DHX9 | DHX9 | DHX9 | DHX9 | DHX9a | DHX9 | |
| DHX9b | ||||||||
| KIAA0052 | K052 | K052 | K052 | K052 | K052 | K052 | K052 | K052 |
| P68p72 | DDX5 | DDX5 | DDX5 | DDX5 | DDX5 | DDX5 | DDX5 | p68 |
| DDX17 | DDX17 | DDX17 | DDX17 | DD17a | DDX17 | DDX17 | ||
| DD17b | ||||||||
| U5-100a | DDX23 | DDX23 | DDX23 | DDX23 | DDX23 | DDX23 | ||
| U5-200a
|
U5200
|
U5200
|
U5200
|
U5200
|
U5200
|
U5200
|
U5200
|
U5200
|
|
Family |
Fly |
Mosquito |
C. elegans |
Arabidopsis |
S. pombe |
S. cerevisiae |
Plasmodium |
T. cruzi |
|---|---|---|---|---|---|---|---|---|
| U11/U12-20 | UB20 | |||||||
| U11/U12-25 | UB25a | |||||||
| UB25b | ||||||||
| U11/U12–31 | UB31 | UB31 | ||||||
| U11/U12-35 | UB35 | UB35 | ||||||
| U11/U12-48 | ||||||||
| U11/U12-65 | UB65 | UB65 | ||||||
| ABS | ABS | ABS | ABS | ABSa | ABS | |||
| ABSb | ||||||||
| DDX26 | DDX26 | DDX26 | ||||||
| DDX39 | WM6 | DDX39 | DDX39 | DDX39 | UAP56 | SUB2 | DDX39 | DDX39 |
| DDX3XY | DDX3 | DDX3 | DDX3a | DDX3a | DED1 | DED1 | DDX3a | |
| DDX3b | DDX3b | DBP1 | DDX3b | |||||
| DDX3c | DDX3c | |||||||
| DDX3d | ||||||||
| DDX46 | DDX46 | DDX46 | DD46a | DD46a | PRP11 | PRP5 | DDX46 | DDX46 |
| DD46b | DD46b | |||||||
| DDX48 | DDX48 | DDX48 | DD48a | IF4Aa | EIF4A | FAL1 | EIF | DDX48 |
| DD48b | IF4Ab | |||||||
| DHX15 | DHX15 | DHX15 | DHX15 | DH15a | DHX15 | PRP43 | DHX15 | DH15a |
| DH15b | DH15b | |||||||
| DH15c | ||||||||
| DHX16 | DHX16 | DHX16 | DH16a | CDC28 | ||||
| DH16b | ||||||||
| DHX35 | DHX35 | DHX35 | DHX35 | DHX35 | ||||
| DHX38 | DHX38 | DHX38 | DHX38 | DHX38 | PRP16 | PRP16 | DHX38 | DHX38 |
| DHX8 | DHX8 | DHX8 | DHX8 | DHX8 | DHX8 | PRP22 | DHX8 | DHX8 |
| DHX9 | MLE | DHX9 | DHX9 | |||||
| KIAA0052 | K052 | K052 | K052 | K052a | K052a | MTR4 | K052 | K052a |
| K052b | K052b | K052b | ||||||
| P68p72 | DDXP | DDXP | DDXP | RH20 | DBP2 | DBP2 | DDXP | DDXPa |
| RH30 | DDXPb | |||||||
| DDXPc | ||||||||
| U5-100a | DDX23 | DDX23 | DDX23 | DDX23 | PRP28 | PRP28 | DDX23 | |
| U5-200a | U5200 | U5200 | U5200 | U520a | BRR2 | BRR2 | U5200 | U520a |
|
|
|
|
U5Hyp
|
U520b
|
|
|
|
U520b
|
-
Detailed identification of each gene is provided in Table S2. Small termination characters identify species/phylum specific duplications.
-
↵a Families annotated as snRNP specific
